3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
8PHJ|1|a|A|1913, 8PHJ|1|a|C|1914, 8PHJ|1|a|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PHJ_084 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.0995
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8PHJ|1|a|G|1910
8PHJ|1|a|PSU|1911
8PHJ|1|a|A|1912
8PHJ|1|a|A|1913
8PHJ|1|a|C|1914
8PHJ|1|a|3TD|1915
8PHJ|1|a|A|1916
8PHJ|1|a|PSU|1917
8PHJ|1|a|A|1918
8PHJ|1|a|A|1919
8PHJ|1|a|C|1920

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain 7
Transfer RNA; tRNA
Chain A
Small subunit ribosomal RNA; SSU rRNA
Chain X
CRISPR-associated protein, APE2256 family

Coloring options:


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