HL_8PHJ_089
3D structure
- PDB id
- 8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cA4-bound Cami1 in complex with 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.67 Å
Loop
- Sequence
- CUG(OMG)GGCGG
- Length
- 9 nucleotides
- Bulged bases
- 8PHJ|1|a|G|2250
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PHJ_089 not in the Motif Atlas
- Homologous match to HL_4WF9_049
- Geometric discrepancy: 0.0981
- The information below is about HL_4WF9_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_11974.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8PHJ|1|a|C|2248
8PHJ|1|a|U|2249
8PHJ|1|a|G|2250
8PHJ|1|a|OMG|2251
8PHJ|1|a|G|2252
8PHJ|1|a|G|2253
8PHJ|1|a|C|2254
8PHJ|1|a|G|2255
8PHJ|1|a|G|2256
Current chains
- Chain a
- 23S rRNA (2862-MER)
Nearby chains
- Chain 7
- Transfer RNA; tRNA
- Chain l
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: