HL_8PHJ_090

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8PHJ|1|a|A|2268, 8PHJ|1|a|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_090 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.0646

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8PHJ|1|a|C|2264
8PHJ|1|a|U|2265
8PHJ|1|a|A|2266
8PHJ|1|a|A|2267
8PHJ|1|a|A|2268
8PHJ|1|a|G|2269
8PHJ|1|a|A|2270
8PHJ|1|a|G|2271
8PHJ|1|a|U|2272
8PHJ|1|a|A|2273
8PHJ|1|a|A|2274
8PHJ|1|a|C|2275
8PHJ|1|a|G|2276

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain l

Large ribosomal subunit protein uL16

Chain v

Large ribosomal subunit protein bL27