HL_8PHJ_095

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8PHJ|1|a|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_095 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0717

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PHJ|1|a|U|2404
8PHJ|1|a|G|2405
8PHJ|1|a|A|2406
8PHJ|1|a|A|2407
8PHJ|1|a|U|2408
8PHJ|1|a|G|2409
8PHJ|1|a|G|2410
8PHJ|1|a|A|2411
8PHJ|1|a|A|2412
8PHJ|1|a|G|2413

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain k

Large ribosomal subunit protein uL15