3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CUGAAAGCAUCUAAG
Length
15 nucleotides
Bulged bases
8PHJ|1|a|G|2751, 8PHJ|1|a|C|2755
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PHJ_102 not in the Motif Atlas
Homologous match to HL_5J7L_199
Geometric discrepancy: 0.076
The information below is about HL_5J7L_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

8PHJ|1|a|C|2745
8PHJ|1|a|U|2746
8PHJ|1|a|G|2747
8PHJ|1|a|A|2748
8PHJ|1|a|A|2749
8PHJ|1|a|A|2750
8PHJ|1|a|G|2751
8PHJ|1|a|C|2752
8PHJ|1|a|A|2753
8PHJ|1|a|U|2754
8PHJ|1|a|C|2755
8PHJ|1|a|U|2756
8PHJ|1|a|A|2757
8PHJ|1|a|A|2758
8PHJ|1|a|G|2759

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

Chain 3
Large ribosomal subunit protein bL36A
Chain g
Large ribosomal subunit protein uL6
Chain i
Large ribosomal subunit protein uL13

Coloring options:


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