HL_8PHJ_111

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_111 not in the Motif Atlas

Homologous match to HL_5J7L_219

Geometric discrepancy: 0.0891

The information below is about HL_5J7L_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PHJ|1|a|G|2304
8PHJ|1|a|U|2305
8PHJ|1|a|C|2306
8PHJ|1|a|G|2307
8PHJ|1|a|G|2308
8PHJ|1|a|A|2309
8PHJ|1|a|C|2310
8PHJ|1|a|A|2311
8PHJ|1|a|U|2312

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain f

Large ribosomal subunit protein uL5