HL_8PJ1_006

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8PJ1|1|A|C|324, 8PJ1|1|A|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ1_006 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2673

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8PJ1|1|A|C|322
8PJ1|1|A|C|323
8PJ1|1|A|C|324
8PJ1|1|A|C|325
8PJ1|1|A|C|326
8PJ1|1|A|G|327
8PJ1|1|A|U|328
8PJ1|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6