HL_8PJ2_006

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8PJ2|1|A|C|324, 8PJ2|1|A|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3276

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PJ2|1|A|C|322
8PJ2|1|A|C|323
8PJ2|1|A|C|324
8PJ2|1|A|C|325
8PJ2|1|A|C|326
8PJ2|1|A|G|327
8PJ2|1|A|U|328
8PJ2|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains