HL_8PJ2_007

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUCGCCGUGCC

Length

11 nucleotides

Bulged bases

8PJ2|1|A|G|385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_007 not in the Motif Atlas

Geometric match to HL_6UFM_001

Geometric discrepancy: 0.2048

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PJ2|1|A|G|377
8PJ2|1|A|U|378
8PJ2|1|A|C|379
8PJ2|1|A|G|380
8PJ2|1|A|C|381
8PJ2|1|A|C|382
8PJ2|1|A|G|383
8PJ2|1|A|U|384
8PJ2|1|A|G|385
8PJ2|1|A|C|386
8PJ2|1|A|C|387

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain R

40S ribosomal protein S8