HL_8PJ2_012

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

8PJ2|1|A|U|540, 8PJ2|1|A|U|541, 8PJ2|1|A|U|542, 8PJ2|1|A|C|543

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_012 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3522

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8PJ2|1|A|C|539
8PJ2|1|A|U|540
8PJ2|1|A|U|541
8PJ2|1|A|U|542
8PJ2|1|A|C|543
8PJ2|1|A|G|544

Current chains

Chain A

18S rRNA

Nearby chains

Chain o

Eukaryotic translation initiation factor 3 subunit G