HL_8PJ2_024

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_024 not in the Motif Atlas

Homologous match to HL_4V88_210

Geometric discrepancy: 0.0673

The information below is about HL_4V88_210

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PJ2|1|A|G|1141
8PJ2|1|A|G|1142
8PJ2|1|A|A|1143
8PJ2|1|A|A|1144
8PJ2|1|A|A|1145
8PJ2|1|A|C|1146

Current chains

Chain A

18S rRNA

Nearby chains

Chain J

40S ribosomal protein S15a

Chain L

40S ribosomal protein S2

Chain Q

40S ribosomal protein S26