3D structure

PDB id
8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAAGG
Length
6 nucleotides
Bulged bases
8PJ3|1|A|A|464
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PJ3_010 not in the Motif Atlas
Homologous match to HL_8C3A_202
Geometric discrepancy: 0.1089
The information below is about HL_8C3A_202
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.3
Basepair signature
cWW-tSW-F
Number of instances in this motif group
54

Unit IDs

8PJ3|1|A|C|462
8PJ3|1|A|C|463
8PJ3|1|A|A|464
8PJ3|1|A|A|465
8PJ3|1|A|G|466
8PJ3|1|A|G|467

Current chains

Chain A
18S rRNA

Nearby chains

Chain 0
Eukaryotic translation initiation factor 5B
Chain S
40S ribosomal protein S6

Coloring options:


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