HL_8PJ3_012

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUCG

Length

6 nucleotides

Bulged bases

8PJ3|1|A|U|542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ3_012 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3094

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8PJ3|1|A|C|539
8PJ3|1|A|U|540
8PJ3|1|A|U|541
8PJ3|1|A|U|542
8PJ3|1|A|C|543
8PJ3|1|A|G|544

Current chains

Chain A

18S rRNA

Nearby chains

Chain o

Eukaryotic translation initiation factor 3 subunit G