HL_8PJ3_034
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 8PJ3|1|A|G|1665
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ3_034 not in the Motif Atlas
- Homologous match to HL_8C3A_225
- Geometric discrepancy: 0.2754
- The information below is about HL_8C3A_225
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01609.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 17
Unit IDs
8PJ3|1|A|G|1658
8PJ3|1|A|U|1659
8PJ3|1|A|C|1660
8PJ3|1|A|A|1661
8PJ3|1|A|U|1662
8PJ3|1|A|A|1663
8PJ3|1|A|A|1664
8PJ3|1|A|G|1665
8PJ3|1|A|C|1666
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Y
- 40S ribosomal protein S16
- Chain d
- 40S ribosomal protein S19
- Chain f
- 40S ribosomal protein S18
- Chain h
- 40S ribosomal protein S20
- Chain i
- 40S ribosomal protein S29
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