HL_8PJ3_038
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ3_038 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.2111
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8PJ3|1|w|G|31
8PJ3|1|w|C|32
8PJ3|1|w|C|33
8PJ3|1|w|C|34
8PJ3|1|w|A|35
8PJ3|1|w|U|36
8PJ3|1|w|A|37
8PJ3|1|w|A|38
8PJ3|1|w|C|39
Current chains
- Chain w
- Initiator Met-tRNA-i
Nearby chains
- Chain 7
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y
- 40S ribosomal protein S16
- Chain b
- 40S ribosomal protein S15
- Chain f
- 40S ribosomal protein S18
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
- Chain z
- Eukaryotic translation initiation factor 5
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