HL_8PJ4_006

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8PJ4|1|A|C|324, 8PJ4|1|A|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ4_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3749

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PJ4|1|A|C|322
8PJ4|1|A|C|323
8PJ4|1|A|C|324
8PJ4|1|A|C|325
8PJ4|1|A|C|326
8PJ4|1|A|G|327
8PJ4|1|A|U|328
8PJ4|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains