HL_8PJ4_014

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ4_014 not in the Motif Atlas

Homologous match to HL_8C3A_206

Geometric discrepancy: 0.0796

The information below is about HL_8C3A_206

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8PJ4|1|A|C|618
8PJ4|1|A|A|619
8PJ4|1|A|G|620
8PJ4|1|A|C|621
8PJ4|1|A|C|622
8PJ4|1|A|G|623

Current chains

Chain A

18S rRNA

Nearby chains

Chain 7

mRNA

Chain E

40S ribosomal protein S23