HL_8PJ4_029

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8PJ4|1|A|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ4_029 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.0756

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8PJ4|1|A|G|1366
8PJ4|1|A|U|1367
8PJ4|1|A|U|1368
8PJ4|1|A|A|1369
8PJ4|1|A|A|1370
8PJ4|1|A|U|1371
8PJ4|1|A|U|1372
8PJ4|1|A|C|1373

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17