HL_8PJ5_010

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8PJ5|1|A|A|464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ5_010 not in the Motif Atlas

Homologous match to HL_8C3A_202

Geometric discrepancy: 0.1172

The information below is about HL_8C3A_202

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

54

Unit IDs

8PJ5|1|A|C|462
8PJ5|1|A|C|463
8PJ5|1|A|A|464
8PJ5|1|A|A|465
8PJ5|1|A|G|466
8PJ5|1|A|G|467

Current chains

Chain A

18S rRNA

Nearby chains

Chain 0

Eukaryotic translation initiation factor 5B

Chain S

40S ribosomal protein S6