HL_8PJ5_029

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8PJ5|1|A|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ5_029 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.087

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8PJ5|1|A|G|1366
8PJ5|1|A|U|1367
8PJ5|1|A|U|1368
8PJ5|1|A|A|1369
8PJ5|1|A|A|1370
8PJ5|1|A|U|1371
8PJ5|1|A|U|1372
8PJ5|1|A|C|1373

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17