HL_8PJ6_006

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCCGUG

Length

8 nucleotides

Bulged bases

8PJ6|1|A|C|324, 8PJ6|1|A|C|325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ6_006 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3702

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PJ6|1|A|C|322
8PJ6|1|A|C|323
8PJ6|1|A|C|324
8PJ6|1|A|C|325
8PJ6|1|A|C|326
8PJ6|1|A|G|327
8PJ6|1|A|U|328
8PJ6|1|A|G|329

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6