HL_8PJ6_038
3D structure
- PDB id
- 8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCCCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ6_038 not in the Motif Atlas
- Homologous match to HL_4V9Q_214
- Geometric discrepancy: 0.1184
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8PJ6|1|w|G|31
8PJ6|1|w|C|32
8PJ6|1|w|C|33
8PJ6|1|w|C|34
8PJ6|1|w|A|35
8PJ6|1|w|U|36
8PJ6|1|w|A|37
8PJ6|1|w|A|38
8PJ6|1|w|C|39
Current chains
- Chain w
- Initiator Met-tRNA-i
Nearby chains
- Chain 7
- mRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain Y
- 40S ribosomal protein S16
- Chain b
- 40S ribosomal protein S15
- Chain q
- Eukaryotic translation initiation factor 1A, X-chromosomal
Coloring options: