HL_8PK0_009

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GCGACAAAC

Length

9 nucleotides

Bulged bases

8PK0|1|A|A|1991, 8PK0|1|A|A|1994

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_009 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2541

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8PK0|1|A|G|1988
8PK0|1|A|C|1989
8PK0|1|A|G|1990
8PK0|1|A|A|1991
8PK0|1|A|C|1992
8PK0|1|A|A|1993
8PK0|1|A|A|1994
8PK0|1|A|A|1995
8PK0|1|A|C|1996

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain 2

39S ribosomal protein L34, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial