HL_8PK0_010

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UCUUAG

Length

6 nucleotides

Bulged bases

8PK0|1|A|C|2036, 8PK0|1|A|A|2039

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_010 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.2122

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

8PK0|1|A|U|2035
8PK0|1|A|C|2036
8PK0|1|A|U|2037
8PK0|1|A|U|2038
8PK0|1|A|A|2039
8PK0|1|A|G|2040

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain M

39S ribosomal protein L15, mitochondrial