HL_8PK0_025

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UGGGGCG

Length

7 nucleotides

Bulged bases

8PK0|1|A|G|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_025 not in the Motif Atlas

Geometric match to HL_8KEB_002

Geometric discrepancy: 0.3715

The information below is about HL_8KEB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97725.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8PK0|1|A|U|2844
8PK0|1|A|G|2845
8PK0|1|A|G|2846
8PK0|1|A|G|2847
8PK0|1|A|G|2848
8PK0|1|A|C|2849
8PK0|1|A|G|2850

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain x

5-methylcytosine rRNA methyltransferase NSUN4