HL_8PK0_028

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AUAACU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_028 not in the Motif Atlas

Geometric match to HL_5J7L_197

Geometric discrepancy: 0.0915

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8PK0|1|A|A|2933
8PK0|1|A|U|2934
8PK0|1|A|A|2935
8PK0|1|A|A|2936
8PK0|1|A|C|2937
8PK0|1|A|U|2938

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain 1

39S ribosomal protein L33, mitochondrial

Chain 3

39S ribosomal protein L35, mitochondrial

Chain q

Growth arrest and DNA damage-inducible proteins-interacting protein 1