HL_8PK0_029

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AGUCCAUAU

Length

9 nucleotides

Bulged bases

8PK0|1|A|A|2994, 8PK0|1|A|U|2995

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_029 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.3219

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8PK0|1|A|A|2989
8PK0|1|A|G|2990
8PK0|1|A|U|2991
8PK0|1|A|C|2992
8PK0|1|A|C|2993
8PK0|1|A|A|2994
8PK0|1|A|U|2995
8PK0|1|A|A|2996
8PK0|1|A|U|2997

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain t

GTP-binding protein 10