HL_8PK0_031

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

8PK0|1|A|U|3072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_031 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2603

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8PK0|1|A|U|3069
8PK0|1|A|U|3070
8PK0|1|A|G|3071
8PK0|1|A|U|3072
8PK0|1|A|U|3073
8PK0|1|A|C|3074
8PK0|1|A|A|3075

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain z

Mitochondrial ribosome-associated GTPase 1