HL_8PK0_037

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UUAACACAAA

Length

10 nucleotides

Bulged bases

8PK0|1|B|U|1614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_037 not in the Motif Atlas

Geometric match to HL_5B63_003

Geometric discrepancy: 0.223

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

8PK0|1|B|U|1613
8PK0|1|B|U|1614
8PK0|1|B|A|1615
8PK0|1|B|A|1616
8PK0|1|B|C|1617
8PK0|1|B|A|1618
8PK0|1|B|C|1619
8PK0|1|B|A|1620
8PK0|1|B|A|1621
8PK0|1|B|A|1622

Current chains

Chain B

CP tRNA-Val

Nearby chains

Chain 6

39S ribosomal protein L38, mitochondrial

Chain P

39S ribosomal protein L18, mitochondrial