HL_8PKL_027

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_027 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1677

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8PKL|1|7|G|978
8PKL|1|7|A|979
8PKL|1|7|A|980
8PKL|1|7|A|981
8PKL|1|7|C|982
8PKL|1|7|A|983
8PKL|1|7|A|984
8PKL|1|7|C|985

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain t

50S ribosomal protein L20

Chain u

50S ribosomal protein L21