8PKL Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8PKL_001 | 1/7/59:68 | No text annotation | homologous HL_5J7L_134 NA | |
| HL_8PKL_002 | 1/7/87:95 | No text annotation | homologous HL_5J7L_135 NA | |
| HL_8PKL_003 | 1/7/123:128 | No text annotation | homologous HL_5J7L_136 NA | |
| HL_8PKL_004 | 1/7/137:142 | UNCG | geometric HL_4LFB_031 HL_61337.2 | |
| HL_8PKL_005 | 1/7/158:168 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_8PKL_006 | 1/7/194:201 | No text annotation | homologous HL_4WF9_006 HL_48677.1 | |
| HL_8PKL_007 | 1/7/225:230 | No text annotation | homologous HL_5J7L_140 NA | |
| HL_8PKL_008 | 1/7/246:252 | No text annotation | homologous HL_5J7L_141 NA | |
| HL_8PKL_009 | 1/7/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_8PKL_010 | 1/7/319:323 | No text annotation | homologous HL_7RQB_011 NA | |
| HL_8PKL_011 | 1/7/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
| HL_8PKL_012 | 1/7/382:392 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_8PKL_013 | 1/7/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
| HL_8PKL_014 | 1/7/462:467 | GNRA | homologous HL_4WF9_015 HL_34789.2 | |
| HL_8PKL_015 | 1/7/487:493 | GNRA | homologous HL_5J7L_148 NA | |
| HL_8PKL_016 | 1/7/544:549 | UNCG | geometric HL_7MLW_002 HL_61337.2 | |
| HL_8PKL_117 | 1/7/566:575 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_150 NA | |
| HL_8PKL_018 | 1/7/611:617 | No text annotation | homologous HL_5J7L_151 NA | |
| HL_8PKL_019 | 1/7/629:634 | GNRA | homologous HL_5J7L_152 NA | |
| HL_8PKL_020 | 1/7/641:647 | No text annotation | homologous HL_5J7L_153 NA | |
| HL_8PKL_021 | 1/7/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_8PKL_022 | 1/7/744:753 | No text annotation | homologous HL_5J7L_155 NA | |
| HL_8PKL_023 | 1/7/779:785 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_8PKL_024 | 1/7/826:831 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_8PKL_025 | 1/7/885:891 | No text annotation | homologous HL_5J7L_158 NA | |
| HL_8PKL_113 | 1/7/955:962 | GNRA | homologous HL_5J7L_211 NA | |
| HL_8PKL_027 | 1/7/978:985 | No text annotation | homologous HL_4WF9_028 HL_47171.1 | |
| HL_8PKL_028 | 1/7/1064:1074 | No text annotation | homologous HL_6PRV_001 HL_20174.1 | |
| HL_8PKL_029 | 1/7/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_98423.2 | |
| HL_8PKL_030 | 1/7/1172:1177 | Mini UNCG | geometric HL_4YAZ_004 HL_90436.2 | |
| HL_8PKL_031 | 1/7/1222:1227 | GNRA | homologous HL_5J7L_164 NA | |
| HL_8PKL_032 | 1/7/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 NA | |
| HL_8PKL_033 | 1/7/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_8PKL_034 | 1/7/1363:1368 | GNRA | homologous HL_5J7L_167 NA | |
| HL_8PKL_035 | 1/7/1389:1398 | No text annotation | homologous HL_5J7L_168 NA | |
| HL_8PKL_036 | 1/7/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 NA | |
| HL_8PKL_037 | 1/7/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_8PKL_038 | 1/7/1533:1538 | No text annotation | geometric HL_5U3G_001 HL_75660.7 | |
| HL_8PKL_039 | 1/7/1565:1568 | No text annotation | homologous HL_7RQB_039 NA | |
| HL_8PKL_040 | 1/7/1612:1619 | No text annotation | homologous HL_5J7L_173 NA | |
| HL_8PKL_041 | 1/7/1630:1636 | GNRA | homologous HL_5J7L_174 NA | |
| HL_8PKL_042 | 1/7/1691:1696 | UNCG | homologous HL_5J7L_175 NA | |
| HL_8PKL_043 | 1/7/1728:1731 | No text annotation | geometric HL_5J7L_176 NA | |
| HL_8PKL_044 | 1/7/1752:1756 | No text annotation | homologous HL_5J7L_177 NA | |
| HL_8PKL_045 | 1/7/1777:1787 | No text annotation | homologous HL_7RQB_045 NA | |
| HL_8PKL_046 | 1/7/1806:1811 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_8PKL_047 | 1/7/1868:1873 | GNRA variation | homologous HL_5J7L_180 NA | |
| HL_8PKL_048 | 1/7/1910:1920 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_8PKL_049 | 1/7/1949:1957 | No text annotation | homologous HL_5J7L_182 NA | |
| HL_8PKL_050 | 1/7/2027:2036 | No text annotation | homologous HL_5J7L_183 NA | |
| HL_8PKL_114 | 1/7/2138:2153 | No text annotation | ||
| HL_8PKL_051 | 1/7/2143:2148 | No text annotation | ||
| HL_8PKL_052 | 1/7/2209:2215 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_8PKL_053 | 1/7/2248:2256 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_8PKL_054 | 1/7/2264:2276 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_8PKL_118 | 1/7/2304:2312 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_8PKL_056 | 1/7/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_8PKL_057 | 1/7/2356:2361 | GNRA | homologous HL_5J7L_190 NA | |
| HL_8PKL_058 | 1/7/2374:2379 | GNRA | homologous HL_5J7L_191 NA | |
| HL_8PKL_059 | 1/7/2404:2413 | No text annotation | homologous HL_5J7L_192 NA | |
| HL_8PKL_060 | 1/7/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_8PKL_061 | 1/7/2528:2535 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_8PKL_062 | 1/7/2551:2557 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_8PKL_063 | 1/7/2594:2599 | GNRA | homologous HL_5J7L_196 NA | |
| HL_8PKL_064 | 1/7/2658:2663 | GNRA | homologous HL_5J7L_197 NA | |
| HL_8PKL_065 | 1/7/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_8PKL_066 | 1/7/2745:2759 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_8PKL_067 | 1/7/2795:2801 | UNCG variation | homologous HL_5J7L_200 NA | |
| HL_8PKL_068 | 1/7/2819:2827 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_8PKL_069 | 1/7/2856:2861 | GNRA | homologous HL_5J7L_202 NA | |
| HL_8PKL_115 | 1/8/34:48 | No text annotation | homologous HL_5J7L_215 NA | |
| HL_8PKL_070 | 1/8/38:44 | No text annotation | geometric HL_5J7L_203 NA | |
| HL_8PKL_071 | 1/8/86:90 | Mini UNCG | homologous HL_5J7L_204 NA | |
| HL_8PKL_072 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_8PKL_073 | 1/A/81:88 | No text annotation | ||
| HL_8PKL_074 | 1/A/158:163 | GNRA | homologous HL_4LFB_003 HL_34789.2 | |
| HL_8PKL_075 | 1/A/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_8PKL_076 | 1/A/203:214 | No text annotation | ||
| HL_8PKL_077 | 1/A/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_8PKL_078 | 1/A/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_8PKL_079 | 1/A/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_8PKL_080 | 1/A/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.2 | |
| HL_8PKL_081 | 1/A/379:384 | GNRA | homologous HL_6CZR_081 NA | |
| HL_8PKL_082 | 1/A/419:424 | UNCG | homologous HL_4LFB_011 HL_61337.2 | |
| HL_8PKL_083 | 1/A/462:470 | No text annotation | ||
| HL_8PKL_116 | 1/A/522:527 | GNRA variation | homologous HL_5J7L_205 NA | |
| HL_8PKL_085 | 1/A/617:623 | GNRA-like with tWH | homologous HL_4LFB_014 HL_86621.1 | |
| HL_8PKL_086 | 1/A/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_8PKL_087 | 1/A/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_8PKL_088 | 1/A/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_8PKL_089 | 1/A/840:846 | No text annotation | geometric HL_2Y8W_001 HL_40612.1 | |
| HL_8PKL_090 | 1/A/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_8PKL_091 | 1/A/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.2 | |
| HL_8PKL_092 | 1/A/963:972 | No text annotation | homologous HL_5J7L_021 NA | |
| HL_8PKL_093 | 1/A/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.2 | |
| HL_8PKL_094 | 1/A/1028:1033 | No text annotation | ||
| HL_8PKL_095 | 1/A/1076:1081 | GNRA | homologous HL_5J7L_023 NA | |
| HL_8PKL_096 | 1/A/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_63894.2 | |
| HL_8PKL_097 | 1/A/1134:1140 | No text annotation | homologous HL_5J7L_025 NA | |
| HL_8PKL_098 | 1/A/1165:1171 | GNRA | homologous HL_4LFB_027 HL_34789.2 | |
| HL_8PKL_099 | 1/A/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.2 | |
| HL_8PKL_100 | 1/A/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
| HL_8PKL_101 | 1/A/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_8PKL_102 | 1/A/1449:1454 | UNCG | homologous HL_4LFB_031 HL_61337.2 | |
| HL_8PKL_103 | 1/A/1515:1520 | GNRA | homologous HL_6CZR_103 NA | |
| HL_8PKL_104 | 1/W/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_8PKL_105 | 1/W/31:39 | tRNA anticodon loop | homologous HL_7U2I_104 NA | |
| HL_8PKL_106 | 1/W/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5L4O_003 NA | |
| HL_8PKL_107 | 1/X/13:23 | No text annotation | homologous HL_5HR7_004 HL_78347.5 | |
| HL_8PKL_108 | 1/X/32:40 | tRNA anticodon loop | homologous HL_1U0B_002 HL_81376.2 | |
| HL_8PKL_109 | 1/X/54:62 | T-loop with 2 stacked bulged bases | homologous HL_1SER_002 NA | |
| HL_8PKL_110 | 1/Y/13:22 | tRNA D-loop | homologous HL_1QF6_001 HL_20490.1 | |
| HL_8PKL_111 | 1/Y/31:39 | tRNA anticodon loop | homologous HL_6UFG_007 HL_81376.2 | |
| HL_8PKL_112 | 1/Y/53:61 | T-loop with 2 stacked bulged bases | homologous HL_6CFJ_108 HL_33597.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8PKL_017 | No text annotation | ||
| HL_8PKL_026 | No text annotation | ||
| HL_8PKL_055 | No text annotation | ||
| HL_8PKL_084 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8PKL_001 | 1/7/24:30, 1/7/510:516 | Triple sheared with non-canonical cWW | homologous IL_5J7L_245 NA | |
| IL_8PKL_002 | 1/7/36:37, 1/7/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_8PKL_003 | 1/7/43:44, 1/7/434:436 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_8PKL_004 | 1/7/81:85, 1/7/97:105 | No text annotation | homologous IL_5J7L_248 NA | |
| IL_8PKL_005 | 1/7/183:184, 1/7/212:214 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_8PKL_006 | 1/7/188:194, 1/7/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 NA | |
| IL_8PKL_007 | 1/7/239:245, 1/7/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 NA | |
| IL_8PKL_008 | 1/7/269:271, 1/7/366:370 | No text annotation | homologous IL_5J7L_252 NA | |
| IL_8PKL_009 | 1/7/274:281, 1/7/359:363 | No text annotation | homologous IL_5J7L_253 NA | |
| IL_8PKL_011 | 1/7/293:295, 1/7/343:347 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_8PKL_012 | 1/7/481:484, 1/7/496:509 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_8PKL_013 | 1/7/536:539, 1/7/554:557 | Double sheared | homologous IL_5J7L_256 NA | |
| IL_8PKL_203 | 1/7/564:566, 1/7/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 NA | |
| IL_8PKL_014 | 1/7/606:610, 1/7/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_8PKL_015 | 1/7/672:674, 1/7/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_8PKL_016 | 1/7/674:678, 1/7/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_8PKL_017 | 1/7/697:698, 1/7/763:765 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_8PKL_018 | 1/7/702:703, 1/7/728:730 | Single bulged G | geometric IL_4V9F_026 IL_28408.2 | |
| IL_8PKL_019 | 1/7/703:707, 1/7/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_8PKL_020 | 1/7/738:740, 1/7/757:758 | Major groove platform | homologous IL_5J7L_264 NA | |
| IL_8PKL_021 | 1/7/775:777, 1/7/787:791 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_8PKL_022 | 1/7/844:847, 1/7/933:934 | 90 degree turn | homologous IL_5J7L_267 NA | |
| IL_8PKL_187 | 1/7/844:848, 1/7/930:934 | No text annotation | homologous IL_5J7L_399 NA | |
| IL_8PKL_023 | 1/7/847:848, 1/7/930:933 | Stack outside cWW | geometric IL_5J7L_268 NA | |
| IL_8PKL_024 | 1/7/850:851, 1/7/926:928 | Single stack bend | homologous IL_5J7L_269 NA | |
| IL_8PKL_025 | 1/7/856:862, 1/7/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | homologous IL_5J7L_270 NA | |
| IL_8PKL_026 | 1/7/862:863, 1/7/913:915 | Single bulged G | geometric IL_5J7L_271 NA | |
| IL_8PKL_027 | 1/7/864:868, 1/7/909:912 | C-loop with bulged stacked A's | homologous IL_5J7L_272 NA | |
| IL_8PKL_028 | 1/7/870:872, 1/7/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 NA | |
| IL_8PKL_029 | 1/7/875:879, 1/7/898:902 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_8PKL_030 | 1/7/880:881, 1/7/895:897 | No text annotation | ||
| IL_8PKL_031 | 1/7/994:996, 1/7/1159:1160 | Single bulged C | homologous IL_7RQB_035 NA | |
| IL_8PKL_032 | 1/7/998:1002, 1/7/1153:1157 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_8PKL_033 | 1/7/1004:1011, 1/7/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_8PKL_034 | 1/7/1011:1013, 1/7/1149:1150 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_8PKL_035 | 1/7/1018:1024, 1/7/1140:1144 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_8PKL_036 | 1/7/1024:1030, 1/7/1124:1140 | No text annotation | geometric IL_5J7L_281 NA | |
| IL_8PKL_037 | 1/7/1031:1034, 1/7/1121:1123 | Isolated non-canonical cWW pair | homologous IL_5J7L_282 NA | |
| IL_8PKL_038 | 1/7/1038:1041, 1/7/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 NA | |
| IL_8PKL_039 | 1/7/1043:1051, 1/7/1108:1112 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_8PKL_040 | 1/7/1059:1062, 1/7/1076:1079 | No text annotation | homologous IL_6PRV_001 IL_28482.1 | |
| IL_8PKL_041 | 1/7/1087:1091, 1/7/1100:1102 | No text annotation | homologous IL_7RQB_044 NA | |
| IL_8PKL_043 | 1/7/1196:1198, 1/7/1247:1250 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.5 | |
| IL_8PKL_044 | 1/7/1202:1206, 1/7/1240:1243 | No text annotation | homologous IL_5J7L_287 NA | |
| IL_8PKL_045 | 1/7/1208:1215, 1/7/1234:1238 | Kink-turn | homologous IL_5J7L_288 NA | |
| IL_8PKL_046 | 1/7/1262:1269, 1/7/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
| IL_8PKL_047 | 1/7/1310:1313, 1/7/1603:1604 | Major groove platform; stack outside cWW | homologous IL_5J7L_290 NA | |
| IL_8PKL_048 | 1/7/1319:1323, 1/7/1331:1333 | C-loop | homologous IL_5J7L_291 NA | |
| IL_8PKL_049 | 1/7/1351:1355, 1/7/1376:1380 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_8PKL_050 | 1/7/1357:1361, 1/7/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_8PKL_051 | 1/7/1415:1416, 1/7/1582:1587 | No text annotation | homologous IL_5J7L_294 NA | |
| IL_8PKL_052 | 1/7/1417:1421, 1/7/1577:1581 | UAA/GAN | homologous IL_5J7L_295 NA | |
| IL_8PKL_053 | 1/7/1432:1435, 1/7/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
| IL_8PKL_054 | 1/7/1437:1440, 1/7/1551:1555 | tSH-tHW | homologous IL_5J7L_297 NA | |
| IL_8PKL_055 | 1/7/1450:1451, 1/7/1459:1461 | Single bulged A | homologous IL_7RQB_059 NA | |
| IL_8PKL_056 | 1/7/1468:1471, 1/7/1520:1524 | No text annotation | homologous IL_5J7L_299 NA | |
| IL_8PKL_057 | 1/7/1474:1478, 1/7/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_8PKL_058 | 1/7/1481:1482, 1/7/1507:1510 | 180 degree turn | homologous IL_5J7L_301 NA | |
| IL_8PKL_059 | 1/7/1489:1491, 1/7/1499:1500 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_8PKL_060 | 1/7/1526:1529, 1/7/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 NA | |
| IL_8PKL_061 | 1/7/1651:1656, 1/7/2004:2006 | No text annotation | homologous IL_5J7L_304 NA | |
| IL_8PKL_062 | 1/7/1663:1665, 1/7/1995:1997 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_8PKL_063 | 1/7/1666:1669, 1/7/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_8PKL_188 | 1/7/1666:1674, 1/7/1990:1994 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_8PKL_064 | 1/7/1669:1674, 1/7/1990:1993 | Intercalated tWH | homologous IL_4WF9_065 IL_28217.1 | |
| IL_8PKL_065 | 1/7/1686:1691, 1/7/1696:1702 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
| IL_8PKL_066 | 1/7/1712:1718, 1/7/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 NA | |
| IL_8PKL_067 | 1/7/1720:1724, 1/7/1736:1740 | Triple sheared | homologous IL_5J7L_310 NA | |
| IL_8PKL_068 | 1/7/1727:1728, 1/7/1731:1733 | Single bulged C | homologous IL_5J7L_311 NA | |
| IL_8PKL_069 | 1/7/1770:1771, 1/7/1980:1982 | Single bulged A | homologous IL_7A0S_064 IL_14190.2 | |
| IL_8PKL_070 | 1/7/1798:1804, 1/7/1813:1821 | Kink-turn related | homologous IL_5J7L_313 NA | |
| IL_8PKL_071 | 1/7/1837:1840, 1/7/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_8PKL_072 | 1/7/1841:1842, 1/7/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_8PKL_073 | 1/7/1846:1849, 1/7/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_8PKL_189 | 1/7/1851:1860, 1/7/1882:1891 | No text annotation | homologous IL_5J7L_387 NA | |
| IL_8PKL_074 | 1/7/1864:1867, 1/7/1874:1878 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_8PKL_075 | 1/7/1933:1934, 1/7/1964:1967 | Bulged stacked bases | homologous IL_5J7L_318 NA | |
| IL_8PKL_076 | 1/7/1934:1945, 1/7/1961:1964 | No text annotation | geometric IL_4WF9_077 IL_84014.1 | |
| IL_8PKL_077 | 1/7/2050:2052, 1/7/2617:2618 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_8PKL_078 | 1/7/2054:2056, 1/7/2612:2615 | No text annotation | homologous IL_5J7L_321 NA | |
| IL_8PKL_190 | 1/7/2067:2069, 1/7/2442:2443 | Single bulged U | homologous IL_4WF9_080 IL_97561.2 | |
| IL_8PKL_081 | 1/7/2070:2071, 1/7/2438:2441 | Minor groove platform | geometric IL_7RQB_081 NA | |
| IL_8PKL_082 | 1/7/2081:2083, 1/7/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 NA | |
| IL_8PKL_083 | 1/7/2085:2087, 1/7/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 NA | |
| IL_8PKL_084 | 1/7/2103:2105, 1/7/2184:2186 | Isolated non-canonical cWW pair | geometric IL_1MZP_001 IL_68118.2 | |
| IL_8PKL_085 | 1/7/2107:2110, 1/7/2179:2182 | Tandem non-canonical cWW pairs | geometric IL_4K27_002 IL_71194.2 | |
| IL_8PKL_086 | 1/7/2110:2120, 1/7/2178:2179 | No text annotation | ||
| IL_8PKL_204 | 1/7/2124:2137, 1/7/2154:2174 | No text annotation | ||
| IL_8PKL_088 | 1/7/2202:2204, 1/7/2220:2221 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_8PKL_089 | 1/7/2350:2353, 1/7/2364:2367 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_8PKL_091 | 1/7/2401:2403, 1/7/2414:2415 | No text annotation | geometric IL_8CRE_056 NA | |
| IL_8PKL_192 | 1/7/2453:2454, 1/7/2498:2500 | Single stack bend | homologous IL_5J7L_391 NA | |
| IL_8PKL_193 | 1/7/2454:2455, 1/7/2496:2498 | Major groove platform | homologous IL_9DFE_092 IL_48076.8 | |
| IL_8PKL_194 | 1/7/2457:2459, 1/7/2493:2494 | Major groove platform | homologous IL_5J7L_393 NA | |
| IL_8PKL_094 | 1/7/2459:2461, 1/7/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_4WF9_092 IL_36931.2 | |
| IL_8PKL_095 | 1/7/2466:2470, 1/7/2480:2484 | Double sheared with non-canonical cWW | homologous IL_5J7L_338 NA | |
| IL_8PKL_195 | 1/7/2507:2508, 1/7/2580:2582 | Major groove platform | homologous IL_5J7L_394 NA | |
| IL_8PKL_097 | 1/7/2510:2512, 1/7/2574:2578 | Isolated non-canonical cWW with bulges | homologous IL_7RQB_097 NA | |
| IL_8PKL_098 | 1/7/2512:2513, 1/7/2571:2574 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_8PKL_099 | 1/7/2522:2523, 1/7/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_8PKL_101 | 1/7/2591:2592, 1/7/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_8PKL_102 | 1/7/2636:2640, 1/7/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 NA | |
| IL_8PKL_103 | 1/7/2652:2658, 1/7/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_5J7L_346 NA | |
| IL_8PKL_104 | 1/7/2680:2684, 1/7/2725:2727 | C-loop | homologous IL_7RQB_104 NA | |
| IL_8PKL_105 | 1/7/2687:2691, 1/7/2718:2722 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_8PKL_106 | 1/7/2695:2696, 1/7/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_8PKL_107 | 1/7/2737:2742, 1/7/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_8PKL_108 | 1/7/2806:2811, 1/7/2889:2892 | No text annotation | homologous IL_5J7L_351 NA | |
| IL_8PKL_109 | 1/7/2838:2839, 1/7/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_8PKL_110 | 1/7/2843:2846, 1/7/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 NA | |
| IL_8PKL_111 | 1/7/2847:2852, 1/7/2865:2869 | tHS double platform | homologous IL_5J7L_354 NA | |
| IL_8PKL_112 | 1/8/17:18, 1/8/65:67 | Major groove intercalation | homologous IL_5J7L_355 NA | |
| IL_8PKL_113 | 1/8/23:28, 1/8/56:60 | No text annotation | homologous IL_5J7L_356 NA | |
| IL_8PKL_114 | 1/8/30:31, 1/8/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 NA | |
| IL_8PKL_115 | 1/8/34:38, 1/8/44:48 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8PKL_116 | 1/8/71:79, 1/8/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA | |
| IL_8PKL_118 | 1/A/30:32, 1/A/552:553 | Single bulged G | geometric IL_5J7L_001 NA | |
| IL_8PKL_119 | 1/A/44:45, 1/A/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_8PKL_120 | 1/A/47:52, 1/A/359:361 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_8PKL_121 | 1/A/54:56, 1/A/356:357 | Minor groove platform | homologous IL_6CZR_116 NA | |
| IL_8PKL_122 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_8PKL_123 | 1/A/67:69, 1/A/99:102 | Minor groove platform with extra cWW | geometric IL_5J7L_006 NA | |
| IL_8PKL_124 | 1/A/69:73, 1/A/97:99 | No text annotation | ||
| IL_8PKL_126 | 1/A/75:77, 1/A/92:95 | Isolated non-canonical cWW with bulges | geometric IL_3KTW_002 NA | |
| IL_8PKL_127 | 1/A/128:131, 1/A/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_8PKL_128 | 1/A/132:136, 1/A/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_8PKL_129 | 1/A/144:146, 1/A/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_8PKL_130 | 1/A/147:153, 1/A/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_8PKL_131 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_8PKL_205 | 1/A/249:252, 1/A/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_8PKL_133 | 1/A/292:293, 1/A/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_8PKL_134 | 1/A/367:369, 1/A/392:393 | Single bulged U | homologous IL_4LFB_014 IL_97561.2 | |
| IL_8PKL_135 | 1/A/371:376, 1/A/387:390 | C-loop with extra cWW pair | geometric IL_4V88_408 NA | |
| IL_8PKL_136 | 1/A/409:418, 1/A/425:433 | No text annotation | ||
| IL_8PKL_137 | 1/A/446:450, 1/A/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
| IL_8PKL_138 | 1/A/450:455, 1/A/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_8PKL_141 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_8PKL_142 | 1/A/515:521, 1/A/528:536 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_8PKL_143 | 1/A/569:575, 1/A/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_8PKL_144 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_8PKL_145 | 1/A/594:596, 1/A/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_8PKL_146 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.2 | |
| IL_8PKL_147 | 1/A/605:612, 1/A/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_8PKL_148 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.2 | |
| IL_8PKL_149 | 1/A/658:659, 1/A/746:748 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_8PKL_150 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_8PKL_151 | 1/A/673:678, 1/A/712:717 | No text annotation | homologous IL_5J7L_034 NA | |
| IL_8PKL_152 | 1/A/684:688, 1/A/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_8PKL_153 | 1/A/774:778, 1/A/804:805 | Left turn | homologous IL_5J7L_036 NA | |
| IL_8PKL_154 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 NA | |
| IL_8PKL_156 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_8PKL_157 | 1/A/922:923, 1/A/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.2 | |
| IL_8PKL_158 | 1/A/925:927, 1/A/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_8PKL_159 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_8PKL_160 | 1/A/953:954, 1/A/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_8PKL_161 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform | geometric IL_4LFB_039 IL_61370.1 | |
| IL_8PKL_198 | 1/A/997:999, 1/A/1041:1044 | No text annotation | geometric IL_4N0T_004 IL_32983.2 | |
| IL_8PKL_162 | 1/A/998:999, 1/A/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_8PKL_206 | 1/A/1003:1007, 1/A/1022:1037 | No text annotation | ||
| IL_8PKL_163 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_8PKL_165 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_8PKL_166 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform | homologous IL_4LFB_045 IL_24264.1 | |
| IL_8PKL_167 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_97561.2 | |
| IL_8PKL_168 | 1/A/1061:1063, 1/A/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.2 | |
| IL_8PKL_170 | 1/A/1124:1128, 1/A/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_8PKL_171 | 1/A/1129:1132, 1/A/1142:1143 | Minor groove platform | homologous IL_5J7L_052 NA | |
| IL_8PKL_172 | 1/A/1158:1161, 1/A/1175:1181 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_8PKL_173 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_8PKL_174 | 1/A/1255:1258, 1/A/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_8PKL_175 | 1/A/1259:1263, 1/A/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_8PKL_176 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation | geometric IL_4LFB_055 IL_57885.2 | |
| IL_8PKL_177 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_8PKL_178 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8PKL_200 | 1/A/1405:1407, 1/A/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_8PKL_201 | 1/A/1407:1409, 1/A/1491:1494 | No text annotation | homologous IL_4LFB_070 IL_29925.2 | |
| IL_8PKL_180 | 1/A/1412:1414, 1/A/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_8PKL_181 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_8PKL_182 | 1/A/1430:1435, 1/A/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_8PKL_183 | 1/A/1440:1442, 1/A/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_8PKL_202 | 1/A/1445:1448, 1/A/1455:1457 | No text annotation | homologous IL_5J7L_065 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8PKL_010 | Isolated non-canonical cWW pair | ||
| IL_8PKL_042 | No text annotation | ||
| IL_8PKL_079 | Tandem non-canonical cWW pairs | ||
| IL_8PKL_080 | No text annotation | ||
| IL_8PKL_191 | No text annotation | ||
| IL_8PKL_087 | No text annotation | ||
| IL_8PKL_090 | Isolated cWH basepair | ||
| IL_8PKL_092 | No text annotation | ||
| IL_8PKL_093 | No text annotation | ||
| IL_8PKL_096 | No text annotation | ||
| IL_8PKL_100 | Tandem non-canonical cWW pairs | ||
| IL_8PKL_117 | Isolated non-canonical cWW pair | ||
| IL_8PKL_125 | Isolated non-canonical cWW pair | ||
| IL_8PKL_196 | No text annotation | ||
| IL_8PKL_132 | No text annotation | ||
| IL_8PKL_197 | No text annotation | ||
| IL_8PKL_139 | No text annotation | ||
| IL_8PKL_140 | No text annotation | ||
| IL_8PKL_155 | Isolated non-canonical cWW pair | ||
| IL_8PKL_199 | No text annotation | ||
| IL_8PKL_164 | Isolated non-canonical cWW pair | ||
| IL_8PKL_169 | Isolated non-canonical cWW pair | ||
| IL_8PKL_179 | No text annotation | ||
| IL_8PKL_184 | No text annotation | ||
| IL_8PKL_185 | Isolated non-canonical cWW pair | ||
| IL_8PKL_186 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8PKL_020 | 1/7/30:31, 1/7/474:481, 1/7/509:510 | No text annotation | geometric J3_5J7L_036 NA | |
| J3_8PKL_021 | 1/7/30:31, 1/7/474:484, 1/7/496:510 | No text annotation | homologous J3_5J7L_066 NA | |
| J3_8PKL_022 | 1/7/32:35, 1/7/445:461, 1/7/468:473 | No text annotation | homologous J3_5J7L_067 NA | |
| J3_8PKL_023 | 1/7/56:57, 1/7/70:76, 1/7/110:114 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_8PKL_024 | 1/7/297:301, 1/7/316:325, 1/7/337:341 | No text annotation | homologous J3_5J7L_068 NA | |
| J3_8PKL_001 | 1/7/683:689, 1/7/773:775, 1/7/791:794 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_8PKL_002 | 1/7/698:700, 1/7/732:736, 1/7/760:763 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_8PKL_003 | 1/7/1055:1058, 1/7/1080:1087, 1/7/1102:1104 | No text annotation | ||
| J3_8PKL_025 | 1/7/1055:1057, 1/7/1081:1090, 1/7/1101:1104 | No text annotation | ||
| J3_8PKL_004 | 1/7/1298:1303, 1/7/1625:1627, 1/7/1639:1642 | No text annotation | homologous J3_5J7L_041 NA | |
| J3_8PKL_005 | 1/7/1306:1309, 1/7/1605:1611, 1/7/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
| J3_8PKL_026 | 1/7/1344:1349, 1/7/1382:1385, 1/7/1402:1403 | No text annotation | homologous J3_5J7L_043 NA | |
| J3_8PKL_027 | 1/7/1424:1429, 1/7/1564:1565, 1/7/1568:1574 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_8PKL_006 | 1/7/2091:2093, 1/7/2196:2200, 1/7/2223:2228 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
| J3_8PKL_028 | 1/7/2282:2284, 1/7/2384:2395, 1/7/2421:2427 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_8PKL_007 | 1/7/2295:2299, 1/7/2317:2323, 1/7/2332:2337 | No text annotation | homologous J3_5J7L_071 NA | |
| J3_8PKL_008 | 1/7/2517:2520, 1/7/2545:2547, 1/7/2561:2567 | No text annotation | homologous J3_5J7L_046 NA | |
| J3_8PKL_029 | 1/7/2789:2791, 1/7/2805:2806, 1/7/2892:2894 | No text annotation | homologous J3_5J7L_047 NA | |
| J3_8PKL_009 | 1/7/2812:2815, 1/7/2831:2836, 1/7/2882:2888 | No text annotation | homologous J3_5J7L_048 NA | |
| J3_8PKL_010 | 1/8/10:16, 1/8/68:70, 1/8/106:110 | No text annotation | homologous J3_5J7L_049 NA | |
| J3_8PKL_030 | 1/A/46:47, 1/A/361:367, 1/A/393:395 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8PKL_031 | 1/A/46:52, 1/A/359:367, 1/A/393:395 | No text annotation | homologous J3_4LFB_014 J3_63856.1 | |
| J3_8PKL_032 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_8PKL_033 | 1/A/586:588, 1/A/651:655, 1/A/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_8PKL_034 | 1/A/672:677, 1/A/713:725, 1/A/732:734 | No text annotation | ||
| J3_8PKL_011 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_8PKL_012 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_8PKL_013 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_8PKL_014 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_8PKL_015 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_8PKL_035 | 1/A/990:997, 1/A/1044:1047, 1/A/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_8PKL_016 | 1/A/1003:1007, 1/A/1022:1028, 1/A/1033:1037 | No text annotation | ||
| J3_8PKL_017 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_8PKL_039 | 1/A/1073:1074, 1/A/1083:1086, 1/A/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_8PKL_018 | 1/A/1116:1118, 1/A/1155:1158, 1/A/1181:1184 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_8PKL_040 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation | homologous J3_4LFB_018 J3_40706.1 | |
| J3_8PKL_019 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation | homologous J3_5J7L_011 NA | |
| J4_8PKL_001 | 1/7/268:269, 1/7/370:375, 1/7/399:406, 1/7/421:424 | No text annotation | homologous J4_5J7L_018 NA | |
| J4_8PKL_002 | 1/7/297:301, 1/7/316:319, 1/7/323:325, 1/7/337:341 | No text annotation | homologous J4_5J7L_019 NA | |
| J4_8PKL_003 | 1/7/601:604, 1/7/624:628, 1/7/635:638, 1/7/650:656 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_8PKL_004 | 1/7/1270:1276, 1/7/1294:1295, 1/7/1645:1648, 1/7/2009:2010 | No text annotation | homologous J4_5J7L_021 NA | |
| J4_8PKL_005 | 1/7/1310:1314, 1/7/1338:1343, 1/7/1404:1405, 1/7/1597:1604 | No text annotation | homologous J4_5J7L_022 NA | |
| J4_8PKL_006 | 1/7/1313:1314, 1/7/1338:1343, 1/7/1404:1405, 1/7/1597:1603 | No text annotation | homologous J4_5J7L_023 NA | |
| J4_8PKL_007 | 1/7/1444:1445, 1/7/1466:1467, 1/7/1525:1526, 1/7/1546:1547 | No text annotation | homologous J4_5J7L_024 NA | |
| J4_8PKL_008 | 1/7/1772:1776, 1/7/1788:1792, 1/7/1827:1830, 1/7/1975:1979 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_8PKL_009 | 1/7/1833:1835, 1/7/1905:1906, 1/7/1924:1933, 1/7/1967:1972 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_8PKL_010 | 1/7/2285:2289, 1/7/2343:2347, 1/7/2370:2372, 1/7/2381:2383 | No text annotation | homologous J4_5J7L_027 NA | |
| J4_8PKL_011 | 1/7/2643:2646, 1/7/2674:2676, 1/7/2731:2735, 1/7/2769:2771 | No text annotation | homologous J4_5J7L_028 NA | |
| J4_8PKL_018 | 1/A/115:122, 1/A/239:240, 1/A/286:289, 1/A/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_8PKL_013 | 1/A/142:144, 1/A/178:184, 1/A/193:199, 1/A/218:221 | No text annotation | ||
| J4_8PKL_014 | 1/A/575:577, 1/A/764:769, 1/A/810:821, 1/A/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_8PKL_015 | 1/W/7:10, 1/W/25:27, 1/W/43:49, 1/W/65:66 | tRNA junction | homologous J4_7EQJ_002 J4_95067.1 | |
| J4_8PKL_016 | 1/X/7:10, 1/X/26:28, 1/X/44:50, 1/X/66:67 | tRNA junction | homologous J4_6CFJ_015 J4_95067.1 | |
| J4_8PKL_017 | 1/Y/7:10, 1/Y/25:27, 1/Y/43:49, 1/Y/65:66 | tRNA junction | homologous J4_3TUP_001 J4_95067.1 | |
| J5_8PKL_001 | 1/7/47:54, 1/7/116:121, 1/7/130:131, 1/7/148:150, 1/7/176:178 | No text annotation | homologous J5_5J7L_013 NA | |
| J5_8PKL_002 | 1/7/531:533, 1/7/560:564, 1/7/577:579, 1/7/1261:1262, 1/7/2017:2018 | No text annotation | homologous J5_5J7L_014 NA | |
| J5_8PKL_003 | 1/7/584:589, 1/7/668:671, 1/7/809:812, 1/7/1195:1196, 1/7/1250:1256 | No text annotation | homologous J5_5J7L_015 NA | |
| J5_8PKL_004 | 1/7/1674:1682, 1/7/1706:1707, 1/7/1751:1752, 1/7/1756:1764, 1/7/1988:1990 | No text annotation | homologous J5_5J7L_016 NA | |
| J5_8PKL_005 | 1/7/2057:2064, 1/7/2446:2453, 1/7/2500:2507, 1/7/2582:2588, 1/7/2606:2611 | No text annotation | ||
| J5_8PKL_006 | 1/7/2074:2077, 1/7/2243:2246, 1/7/2258:2259, 1/7/2281:2282, 1/7/2427:2435 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_8PKL_007 | 1/A/36:39, 1/A/403:406, 1/A/436:442, 1/A/492:500, 1/A/545:548 | No text annotation | ||
| J5_8PKL_008 | 1/A/58:61, 1/A/106:113, 1/A/314:316, 1/A/337:339, 1/A/350:354 | No text annotation | homologous J5_5J7L_003 NA | |
| J6_8PKL_001 | 1/7/45:46, 1/7/179:183, 1/7/214:224, 1/7/231:235, 1/7/262:266, 1/7/426:433 | No text annotation | ||
| J6_8PKL_002 | 1/7/2074:2077, 1/7/2243:2246, 1/7/2258:2259, 1/7/2281:2284, 1/7/2384:2395, 1/7/2421:2435 | No text annotation | ||
| J7_8PKL_001 | 1/7/8:15, 1/7/525:531, 1/7/2018:2023, 1/7/2040:2043, 1/7/2625:2630, 1/7/2788:2789, 1/7/2894:2895 | No text annotation | ||
| J7_8PKL_002 | 1/7/817:822, 1/7/835:838, 1/7/940:946, 1/7/971:976, 1/7/987:991, 1/7/1163:1164, 1/7/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8PKL_036 | No text annotation | ||
| J3_8PKL_037 | No text annotation | ||
| J3_8PKL_038 | No text annotation | ||
| J4_8PKL_012 | No text annotation |
Coloring options: