HL_8PKL_053

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

8PKL|1|7|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_053 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0663

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PKL|1|7|C|2248
8PKL|1|7|U|2249
8PKL|1|7|G|2250
8PKL|1|7|OMG|2251
8PKL|1|7|G|2252
8PKL|1|7|G|2253
8PKL|1|7|C|2254
8PKL|1|7|G|2255
8PKL|1|7|G|2256

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain W

Transfer RNA; tRNA

Chain h

50S ribosomal protein L16

Chain z

50S ribosomal protein L27