HL_8PKL_091

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_091 not in the Motif Atlas

Homologous match to HL_4LFB_020

Geometric discrepancy: 0.0858

The information below is about HL_4LFB_020

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8PKL|1|A|C|897
8PKL|1|A|G|898
8PKL|1|A|C|899
8PKL|1|A|A|900
8PKL|1|A|A|901
8PKL|1|A|G|902

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 7

Large subunit ribosomal RNA; LSU rRNA

Chain b

50S ribosomal protein L2