HL_8PKL_108
3D structure
- PDB id
- 8PKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- G(RSP)UICG(2MA)AC
- Length
- 9 nucleotides
- Bulged bases
- 8PKL|1|X|U|34
- QA status
- Modified nucleotides: RSP, 2MA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PKL_108 not in the Motif Atlas
- Homologous match to HL_1U0B_002
- Geometric discrepancy: 0.4773
- The information below is about HL_1U0B_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.2
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 42
Unit IDs
8PKL|1|X|G|32
8PKL|1|X|RSP|33
8PKL|1|X|U|34
8PKL|1|X|I|35
8PKL|1|X|C|36
8PKL|1|X|G|37
8PKL|1|X|2MA|38
8PKL|1|X|A|39
8PKL|1|X|C|40
Current chains
- Chain X
- tRNA-Arg (E-site)
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain G
- 30S ribosomal protein S7
- Chain K
- Small ribosomal subunit protein uS11
- Chain V
- mRNA
- Chain W
- Transfer RNA; tRNA
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