HL_8PKL_111
3D structure
- PDB id
- 8PKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- CAUGGCAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PKL_111 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1676
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
8PKL|1|Y|C|31
8PKL|1|Y|A|32
8PKL|1|Y|U|33
8PKL|1|Y|G|34
8PKL|1|Y|G|35
8PKL|1|Y|C|36
8PKL|1|Y|A|37
8PKL|1|Y|U|38
8PKL|1|Y|G|39
Current chains
- Chain Y
- tRNA-Ala (A-site)
Nearby chains
- Chain 7
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- Small ribosomal subunit protein uS12
- Chain V
- mRNA
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