HL_8PKL_115
3D structure
- PDB id
- 8PKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8PKL|1|8|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PKL_115 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.2158
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8PKL|1|8|A|34
8PKL|1|8|C|35
8PKL|1|8|C|36
8PKL|1|8|C|37
8PKL|1|8|C|38
8PKL|1|8|A|39
8PKL|1|8|U|40
8PKL|1|8|G|41
8PKL|1|8|C|42
8PKL|1|8|C|43
8PKL|1|8|G|44
8PKL|1|8|A|45
8PKL|1|8|A|46
8PKL|1|8|C|47
8PKL|1|8|U|48
Current chains
- Chain 8
- 5S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL31A
- Chain 7
- Large subunit ribosomal RNA; LSU rRNA
- Chain e
- 50S ribosomal protein L5
- Chain r
- 50S ribosomal protein L18
Coloring options: