HL_8PNN_008
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUGGGAAUG
- Length
- 10 nucleotides
- Bulged bases
- 8PNN|1|1|G|283, 8PNN|1|1|A|284, 8PNN|1|1|A|285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_008 not in the Motif Atlas
- Homologous match to HL_8P9A_120
- Geometric discrepancy: 0.0593
- The information below is about HL_8P9A_120
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_77436.5
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 23
Unit IDs
8PNN|1|1|U|278
8PNN|1|1|U|279
8PNN|1|1|U|280
8PNN|1|1|G|281
8PNN|1|1|G|282
8PNN|1|1|G|283
8PNN|1|1|A|284
8PNN|1|1|A|285
8PNN|1|1|U|286
8PNN|1|1|G|287
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AP
- 60S ribosomal protein L42-A
- Chain t
- 60S ribosomal protein L13-A
- Chain v
- 60S ribosomal protein L15-A
- Chain y
- 60S ribosomal protein L18-A
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