HL_8PNN_023

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCGAAAUGA

Length

9 nucleotides

Bulged bases

8PNN|1|1|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_023 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.3598

The information below is about HL_9DE7_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8PNN|1|1|U|1022
8PNN|1|1|C|1023
8PNN|1|1|G|1024
8PNN|1|1|A|1025
8PNN|1|1|A|1026
8PNN|1|1|A|1027
8PNN|1|1|U|1028
8PNN|1|1|G|1029
8PNN|1|1|A|1030

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain Q

40S ribosomal protein S15

Chain i

Suppressor protein STM1

Chain s

Large ribosomal subunit protein uL5B