HL_8PNN_031

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8PNN|1|1|G|1507, 8PNN|1|1|U|1511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_031 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.0641

The information below is about HL_8P9A_144

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8PNN|1|1|A|1506
8PNN|1|1|G|1507
8PNN|1|1|C|1508
8PNN|1|1|A|1509
8PNN|1|1|G|1510
8PNN|1|1|U|1511
8PNN|1|1|U|1512

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AM

60S ribosomal protein L39

Chain x

60S ribosomal protein L17-A

Chain z

60S ribosomal protein L19-A