HL_8PNN_063

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_063 not in the Motif Atlas

Homologous match to HL_8P9A_177

Geometric discrepancy: 0.1035

The information below is about HL_8P9A_177

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12125.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

12

Unit IDs

8PNN|1|1|U|3068
8PNN|1|1|G|3069
8PNN|1|1|A|3070
8PNN|1|1|U|3071
8PNN|1|1|C|3072
8PNN|1|1|A|3073

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 5

60S ribosomal protein L22-A

Chain AE

60S ribosomal protein L31-A

Chain z

60S ribosomal protein L19-A