3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
AAUGUAAAUACCU
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PNN_087 not in the Motif Atlas
Homologous match to HL_8P9A_203
Geometric discrepancy: 0.0942
The information below is about HL_8P9A_203
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_05304.3
Basepair signature
cWW-cWW-F-F-tSH-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

8PNN|1|A|A|520
8PNN|1|A|A|521
8PNN|1|A|U|522
8PNN|1|A|G|523
8PNN|1|A|U|524
8PNN|1|A|A|525
8PNN|1|A|A|526
8PNN|1|A|A|527
8PNN|1|A|U|528
8PNN|1|A|A|529
8PNN|1|A|C|530
8PNN|1|A|C|531
8PNN|1|A|U|532

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
40S ribosomal protein S9-A
Chain Z
40S ribosomal protein S24-A

Coloring options:


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