HL_8PNN_092

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_092 not in the Motif Atlas

Homologous match to HL_8CRE_210

Geometric discrepancy: 0.1369

The information below is about HL_8CRE_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8PNN|1|A|A|900
8PNN|1|A|G|901
8PNN|1|A|G|902
8PNN|1|A|U|903
8PNN|1|A|G|904
8PNN|1|A|A|905
8PNN|1|A|A|906
8PNN|1|A|A|907
8PNN|1|A|U|908
8PNN|1|A|U|909

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

40S ribosomal protein S14-B

Chain b

Small ribosomal subunit protein eS26B