HL_8PNN_129

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8PNN|1|AR|C|959, 8PNN|1|AR|U|960, 8PNN|1|AR|C|961, 8PNN|1|AR|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_129 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.045

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8PNN|1|AR|C|958
8PNN|1|AR|C|959
8PNN|1|AR|U|960
8PNN|1|AR|C|961
8PNN|1|AR|A|962
8PNN|1|AR|G|963

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29

Chain DQ

60S ribosomal protein L42-A