HL_8PNN_134

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

8PNN|1|AR|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_134 not in the Motif Atlas

Homologous match to HL_8P9A_139

Geometric discrepancy: 0.0654

The information below is about HL_8P9A_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PNN|1|AR|C|1239
8PNN|1|AR|A|1240
8PNN|1|AR|U|1241
8PNN|1|AR|G|1242
8PNN|1|AR|G|1243
8PNN|1|AR|A|1244
8PNN|1|AR|A|1245
8PNN|1|AR|G|1246
8PNN|1|AR|U|1247
8PNN|1|AR|C|1248
8PNN|1|AR|G|1249

Current chains

Chain AR

25S ribosomal RNA

Nearby chains