HL_8PNN_145

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

8PNN|1|AR|C|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_145 not in the Motif Atlas

Homologous match to HL_8P9A_150

Geometric discrepancy: 0.0879

The information below is about HL_8P9A_150

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25967.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8PNN|1|AR|C|1759
8PNN|1|AR|A|1760
8PNN|1|AR|C|1761
8PNN|1|AR|C|1762
8PNN|1|AR|U|1763
8PNN|1|AR|U|1764
8PNN|1|AR|U|1765
8PNN|1|AR|G|1766

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain CW

60S ribosomal protein L22-A