HL_8PNN_165
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8PNN|1|AR|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_165 not in the Motif Atlas
- Homologous match to HL_8P9A_171
- Geometric discrepancy: 0.053
- The information below is about HL_8P9A_171
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
8PNN|1|AR|C|2776
8PNN|1|AR|G|2777
8PNN|1|AR|G|2778
8PNN|1|AR|A|2779
8PNN|1|AR|A|2780
8PNN|1|AR|U|2781
8PNN|1|AR|U|2782
8PNN|1|AR|U|2783
8PNN|1|AR|G|2784
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CN
- 60S ribosomal protein L13-A
- Chain DC
- 60S ribosomal protein L28
- Chain DK
- 60S ribosomal protein L36-A
- Chain DQ
- 60S ribosomal protein L42-A
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