HL_8PNN_166

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_166 not in the Motif Atlas

Homologous match to HL_8P9A_172

Geometric discrepancy: 0.0592

The information below is about HL_8P9A_172

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8PNN|1|AR|C|2840
8PNN|1|AR|G|2841
8PNN|1|AR|U|2842
8PNN|1|AR|U|2843
8PNN|1|AR|C|2844
8PNN|1|AR|A|2845
8PNN|1|AR|U|2846
8PNN|1|AR|A|2847
8PNN|1|AR|G|2848

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CL

60S ribosomal protein L10

Chain DO

Ubiquitin-60S ribosomal protein L40