HL_8PNN_193

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

8PNN|1|sR|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_193 not in the Motif Atlas

Homologous match to HL_8P9A_200

Geometric discrepancy: 0.0656

The information below is about HL_8P9A_200

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8PNN|1|sR|C|414
8PNN|1|sR|C|415
8PNN|1|sR|A|416
8PNN|1|sR|A|417
8PNN|1|sR|G|418
8PNN|1|sR|G|419

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain CX

60S ribosomal protein L23-A

Chain d4

40S ribosomal protein S24-A

Chain s6

40S ribosomal protein S6-A