HL_8PNN_197

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_197 not in the Motif Atlas

Homologous match to HL_8P9A_204

Geometric discrepancy: 0.0586

The information below is about HL_8P9A_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8PNN|1|sR|C|569
8PNN|1|sR|A|570
8PNN|1|sR|G|571
8PNN|1|sR|C|572
8PNN|1|sR|C|573
8PNN|1|sR|G|574

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A