HL_8PNN_205

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

8PNN|1|sR|U|1058, 8PNN|1|sR|U|1059, 8PNN|1|sR|U|1060

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_205 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.0935

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97917.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PNN|1|sR|U|1055
8PNN|1|sR|U|1056
8PNN|1|sR|U|1057
8PNN|1|sR|U|1058
8PNN|1|sR|U|1059
8PNN|1|sR|U|1060
8PNN|1|sR|A|1061
8PNN|1|sR|A|1062
8PNN|1|sR|U|1063
8PNN|1|sR|G|1064

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A